Developmental, cellular, and subcellular variations in the direction of neuronal Cl– currents elicited by GABAA receptor activation have been frequently reported. We found a corresponding variance in the GABAA receptor reversal potential (EGABA) for synapses originating from individual interneurons onto a single pyramidal cell. These findings suggest a similar heterogeneity in the cytoplasmic intracellular concentration of chloride ([Cl–]i) in individual dendrites. We determined [Cl–]i in the murine hippocampus and cerebral cortex of both sexes by (1) two-photon imaging of the Cl–-sensitive, ratiometric fluorescent protein SuperClomeleon; (2) Fluorescence Lifetime IMaging (FLIM) of the Cl–-sensitive fluorophore MEQ (6-methoxy- N -ethylquinolinium); and (3) electrophysiological measurements of EGABA by pressure application of GABA and RuBi-GABA uncaging. Fluorometric and electrophysiological estimates of local [Cl–]i were highly correlated. [Cl–]i microdomains persisted after pharmacological inhibition of c...